eczech/gpn-animal-promoter-dataset-metadata

GPN promoter dataset metadata mapping

Commands

# Extract unique RefSeq IDs from GPN promoter dataset
python gpn_promoter_accession_extraction.py --output_dir=$(pwd) | tee gpn_promoter_accession_extraction.log 2>&1

# Fetch taxonomy information for RefSeq IDs
bash gpn_promoter_accession_mapping.sh unique_refseq_ids_train.txt refseq_taxonomy_results_train.tsv
bash gpn_promoter_accession_mapping.sh unique_refseq_ids_validation.txt refseq_taxonomy_results_validation.tsv
bash gpn_promoter_accession_mapping.sh unique_refseq_ids_test.txt refseq_taxonomy_results_test.tsv

{ head -1 refseq_taxonomy_results_train.tsv; tail -q -n +2 refseq_taxonomy_results_train.tsv refseq_taxonomy_results_validation.tsv refseq_taxonomy_results_test.tsv | sort -u; } > refseq_taxonomy_results_merged.tsv

# Upload metadata to Hugging Face at eczech/gpn-animal-promoter-dataset-metadata
uv run hf upload eczech/gpn-animal-promoter-dataset-metadata . --repo-type dataset

# Map taxonomy information (in eczech/gpn-animal-promoter-dataset-metadata) to
# original GPN promoter dataset and upload result transformed dataset at
# eczech/gpn-animal-promoter-dataset
python gpn_promoter_dataset_transform.py | tee gpn_promoter_dataset_transform.log 2>&1

Results

From taxonomy mapping file:

head /Users/eczech/tmp/gpn_promoter_species/refseq_taxonomy_results.tsv
RefSeqID	Organism	TaxID	Title	SubType	SubName
NC_000001	Homo sapiens	9606	Homo sapiens chromosome 1, GRCh38.p14 Primary Assembly	chromosome	1
NC_000002	Homo sapiens	9606	Homo sapiens chromosome 2, GRCh38.p14 Primary Assembly	chromosome	2
NC_000003	Homo sapiens	9606	Homo sapiens chromosome 3, GRCh38.p14 Primary Assembly	chromosome	3
NC_000004	Homo sapiens	9606	Homo sapiens chromosome 4, GRCh38.p14 Primary Assembly	chromosome	4
NC_000005	Homo sapiens	9606	Homo sapiens chromosome 5, GRCh38.p14 Primary Assembly	chromosome	5
NC_000006	Homo sapiens	9606	Homo sapiens chromosome 6, GRCh38.p14 Primary Assembly	chromosome	6
NC_000007	Homo sapiens	9606	Homo sapiens chromosome 7, GRCh38.p14 Primary Assembly	chromosome	7
NC_000008	Homo sapiens	9606	Homo sapiens chromosome 8, GRCh38.p14 Primary Assembly	chromosome	8
NC_000009	Homo sapiens	9606	Homo sapiens chromosome 9, GRCh38.p14 Primary Assembly	chromosome	9

Unique species mapped (434):

> cat refseq_taxonomy_results.tsv | cut -d$'\t' -f 2 | sort | uniq
Acanthaster planci
Acanthisitta chloris
Acanthopagrus latus
Acipenser ruthenus
Acropora millepora
Actinia tenebrosa
Adelges cooleyi
Aethina tumida
Agrilus planipennis
Alligator mississippiensis
Amia ocellicauda
Amphimedon queenslandica
Amphiprion ocellaris
Amyelois transitella
Anabas testudineus
Anarrhichthys ocellatus
Anguilla rostrata
Anneissia japonica
Anolis carolinensis
Anopheles bellator
Anoplophora glabripennis
Anoplopoma fimbria
Antrostomus carolinensis
Apaloderma vittatum
Aphidius gifuensis
Apis cerana
Aplysia californica
Apteryx rowi
Apus apus
Aquila chrysaetos chrysaetos
Argiope bruennichi
Aricia agestis
Artemia franciscana
Astatotilapia calliptera
Asterias rubens
Astyanax mexicanus
Athalia rosae
Athene cunicularia
Bacillus rossius redtenbacheri
Balaenoptera musculus
Belonocnema kinseyi
Bemisia tabaci
Betta splendens
Biomphalaria glabrata
Bolinopsis microptera
Bombyx mori
Bradysia coprophila
Branchiostoma lanceolatum
Brienomyrus brachyistius
Brugia malayi
Bubalus bubalis
Buceros rhinoceros silvestris
Caenorhabditis elegans
Calidris pugnax
Callithrix jacchus
Callorhinchus milii
Caloenas nicobarica
Calypte anna
Camarhynchus parvulus
Camelus ferus
Candoia aspera
Carassius gibelio
Cariama cristata
Carlito syrichta
Cataglyphis hispanica
Catharus ustulatus
Cavia porcellus
Centruroides sculpturatus
Cephus cinctus
Ceratosolen solmsi marchali
Cervus canadensis
Chanos chanos
Charadrius vociferus
Chelmon rostratus
Chinchilla lanigera
Chiroxiphia lanceolata
Chlamydotis macqueenii
Choloepus didactylus
Chrysoperla carnea
Cimex lectularius
Cinclus cinclus
Ciona intestinalis
Ciona intestinalis B CG-2006
Clarias gariepinus
Cloeon dipterum
Clupea harengus
Coccinella septempunctata
Colius striatus
Cololabis saira
Condylura cristata
Conger conger
Contarinia nasturtii
Copidosoma floridanum
Corticium candelabrum
Corvus cornix cornix
Cottoperca gobio
Coturnix japonica
Crassostrea virginica
Crocodylus porosus
Cryptotermes secundus
Ctenocephalides felis
Ctenopharyngodon idella
Cuculus canorus
Culicoides brevitarsis
Cyclopterus lumpus
Cydia amplana
Cygnus atratus
Cylas formicarius
Cynocephalus volans
Cynoglossus semilaevis
Cyprinodon variegatus
Cyrtonyx montezumae
Daktulosphaira vitifoliae
Dalotia coriaria
Danaus plexippus
Danio rerio
Daphnia carinata
Dasypus novemcinctus
Denticeps clupeoides
Dermatophagoides pteronyssinus
Dermochelys coriacea
Diceros bicornis
Diceros bicornis minor
Diorhabda carinulata
Dreissena polymorpha
Dromaius novaehollandiae
Dromiciops gliroides
Drosophila melanogaster
Dryobates pubescens
Dufourea novaeangliae
Dysidea avara
Echeneis naucrates
Echinococcus granulosus
Echinops telfairi
Egretta garzetta
Electrophorus electricus
Eleginops maclovinus
Elephantulus edwardii
Elephas maximus indicus
Eleutherodactylus coqui
Elgaria multicarinata webbii
Engraulis encrasicolus
Episyrphus balteatus
Eptesicus fuscus
Erinaceus europaeus
Eriocheir sinensis
Erpetoichthys calabaricus
Esox lucius
Etheostoma cragini
Eublepharis macularius
Euleptes europaea
Eurypyga helias
Eurytemora carolleeae
Euwallacea similis
Exaiptasia diaphana
Falco rusticolus
Folsomia candida
Fukomys damarensis
Fulmarus glacialis
Fundulus heteroclitus
Gadus macrocephalus
Galendromus occidentalis
Gambusia affinis
Gasterosteus aculeatus
Gavia stellata
Gavialis gangeticus
Geotrypetes seraphini
Gigantopelta aegis
Girardinichthys multiradiatus
Glossina fuscipes
Gopherus evgoodei
Gordionus sp. m RMFG-2023
Gouania willdenowi
Grus americana
Gymnodraco acuticeps
Gymnogyps californianus
Halichondria panicea
Haliotis rufescens
Halyomorpha halys
Helicoverpa armigera
Helobdella robusta
Hemicordylus capensis
Hemiscyllium ocellatum
Hermetia illucens
Heteronotia binoei
Hippoglossus hippoglossus
Hippopotamus amphibius
Hippopotamus amphibius kiboko
Hipposideros armiger
Hirundo rustica
Homalodisca vitripennis
Homarus americanus
Homo sapiens
Hoplias malabaricus
Hyaena hyaena
Hyalella azteca
Hydra vulgaris
Hydractinia symbiolongicarpus
Hylaeus volcanicus
Hypomesus transpacificus
Hyposmocoma kahamanoa
Ictalurus furcatus
Ictidomys tridecemlineatus
Indicator indicator
Ischnura elegans
Jaculus jaculus
Kryptolebias marmoratus
Labrus bergylta
Lacerta agilis
Lampris incognitus
Larimichthys crocea
Lates calcarifer
Latimeria chalumnae
Lemur catta
Lepisosteus oculatus
Leptopilina boulardi
Leptosomus discolor
Lethenteron reissneri
Leucoraja erinaceus
Limulus polyphemus
Lineus longissimus
Lingula anatina
Liolophura japonica
Liolophura sinensis
Lipotes vexillifer
Lottia gigantea
Lucilia cuprina
Lutra lutra
Lutzomyia longipalpis
Lytechinus pictus
Macaca fascicularis
Malurus melanocephalus
Manduca sexta
Manis pentadactyla
Mastacembelus armatus
Mauremys reevesii
Megalops cyprinoides
Melanotaenia boesemani
Melopsittacus undulatus
Mercenaria mercenaria
Merops nubicus
Mesitornis unicolor
Mesoplodon densirostris
Microcebus murinus
Micropterus dolomieu
Microtus ochrogaster
Miniopterus natalensis
Misgurnus anguillicaudatus
Mobula hypostoma
Molossus molossus
Molothrus ater
Monodelphis domestica
Monodon monoceros
Monopterus albus
Morone saxatilis
Moschus berezovskii
Motacilla alba
Motacilla alba alba
Mugil cephalus
Mus musculus
Mya arenaria
Myiozetetes cayanensis
Myripristis murdjan
Mytilus trossulus
Nanorana parkeri
Nasonia vitripennis
Necator americanus
Nematostella vectensis
Neoarius graeffei
Neodiprion fabricii
Neomonachus schauinslandi
Nicrophorus vespilloides
Nilaparvata lugens
Nipponia nippon
Nothobranchius furzeri
Nothoprocta perdicaria
Notothenia coriiceps
Numida meleagris
Nycticebus coucang
Ochotona princeps
Octodon degus
Octopus bimaculoides
Odobenus rosmarus divergens
Odobenus rosmarus rosmarus
Oenanthe melanoleuca
Opisthorchis viverrini
Oppia nitens
Orbicella faveolata
Organism
Ornithodoros turicata
Ornithorhynchus anatinus
Orussus abietinus
Oryctolagus cuniculus
Oryzias latipes
Oscarella lobularis
Osmia bicornis bicornis
Ostrinia nubilalis
Otolemur garnettii
Pangasianodon hypophthalmus
Panthera leo
Papilio machaon
Paralichthys olivaceus
Paramacrobiotus metropolitanus
Parambassis ranga
Parus major
Passer domesticus
Patella vulgata
Pecten maximus
Pectinophora gossypiella
Pediculus humanus corporis
Penaeus chinensis
Periophthalmus magnuspinnatus
Perognathus longimembris pacificus
Phacochoerus africanus
Phaethon lepturus
Phalacrocorax carbo
Phocoena sinus
Photinus pyralis
Phyllostomus discolor
Physeter macrocephalus
Pieris rapae
Pimephales promelas
Planococcus citri
Plectropomus leopardus
Plutella xylostella
Pocillopora verrucosa
Pogoniulus pusillus
Pollicipes pollicipes
Polyodon spathula
Pomacea canaliculata
Portunus trituberculatus
Priapulus caudatus
Prinia subflava
Pristis pectinata
Procambarus clarkii
Propithecus coquereli
Protobothrops mucrosquamatus
Pseudochaenichthys georgianus
Pseudoliparis swirei
Pseudonaja textilis
Pterocles gutturalis
Pteronotus mesoamericanus
Pygocentrus nattereri
Pygoscelis adeliae
Python bivittatus
Rhea pennata
Rhincodon typus
Rhineura floridana
Rhinolophus ferrumequinum
Rhipicephalus sanguineus
Rhopalosiphum maidis
Rhopilema esculentum
Rissa tridactyla
Rousettus aegyptiacus
Saccoglossus kowalevskii
Saccopteryx leptura
Salarias fasciatus
Salvelinus alpinus
Salvelinus sp. IW2-2015
Sarcophilus harrisii
Scatophagus argus
Sceloporus undulatus
Schistosoma mansoni
Scleropages formosus
Scomber scombrus
Scophthalmus maximus
Sebastes umbrosus
Serinus canaria
Seriola aureovittata
Silurus meridionalis
Siniperca chuatsi
Solea senegalensis
Sorex araneus
Spea bombifrons
Sphaeramia orbicularis
Stegodyphus dumicola
Stegostoma tigrinum
Stomoxys calcitrans
Strigops habroptila
Strongylocentrotus purpuratus
Strongyloides ratti
Struthio camelus
Sturnus vulgaris
Styela clava
Suricata suricatta
Sycon ciliatum
Sylvia atricapilla
Symphalangus syndactylus
Symsagittifera roscoffensis
Synchiropus splendidus
Syngnathus acus
Tachyglossus aculeatus
Tachysurus vachellii
Taeniopygia guttata
Takifugu flavidus
Tauraco erythrolophus
Teleopsis dalmanni
Tetranychus urticae
Thalassophryne amazonica
Thamnophis elegans
Thrips palmi
Tigriopus californicus
Tiliqua scincoides
Toxotes jaculatrix
Trachemys scripta
Trachemys scripta elegans
Tribolium castaneum
Trichechus manatus
Trichechus manatus latirostris
Trichinella spiralis
Trichogramma pretiosum
Trichomycterus rosablanca
Trichoplax adhaerens
Trichosurus vulpecula
Triplophysa dalaica
Tupaia chinensis
Tursiops truncatus
Tyto alba
Uloborus diversus
Ursus arctos
Varanus komodoensis
Varroa jacobsoni
Venturia canescens
Vespula pensylvanica
Vombatus ursinus
Vulpes lagopus
Xenia sp. Carnegie-2017
Xenopus tropicalis
Xiphias gladius
Xyrauchen texanus
Zalophus californianus
Zeugodacus cucurbitae
Zonotrichia leucophrys gambelii
Zootermopsis nevadensis

From dataset transformation:

============================================================
MAPPING STATISTICS - ALL SPLITS
============================================================

TRAIN split:
  Total examples: 9038354
  Mapped: 8311631 (91.96%)
  Unmapped: 726723 (8.04%)
  Unique organisms (excluding NULL): 433

  Top 10 most common organisms:
    Carassius gibelio: 49889
    Acipenser ruthenus: 45669
    Mercenaria mercenaria: 44179
    Xyrauchen texanus: 43525
    Dreissena polymorpha: 42849
    Mya arenaria: 40852
    Mytilus trossulus: 37880
    Haliotis rufescens: 36563
    Hemicordylus capensis: 35002

More detailed stats:

> python -c "
from datasets import load_dataset
from collections import Counter
from rich.console import Console
from rich.table import Table

# Load dataset
print('Loading dataset...')
ds = load_dataset('eczech/gpn-animal-promoter-dataset', split='train')

# Extract organism field using map with multiprocessing
print('Extracting organism field...')
organisms = []
def extract_organism(example):
    organisms.append(example['organism'])
    return example

ds.map(lambda x: x, num_proc=96)

# Alternative: directly access the column
organisms = ds['organism']

# Count frequencies
counter = Counter(organisms)
total = sum(counter.values())

# Create rich table
console = Console()
table = Table(title='Organism Frequency Distribution', show_lines=False)
table.add_column('Organism', style='cyan', no_wrap=False)
table.add_column('Count', justify='right', style='magenta')
table.add_column('Percentage', justify='right', style='green')

# Sort by count descending
for organism, count in sorted(counter.items(), key=lambda x: x[1], reverse=True):
    percentage = (count / total) * 100
    table.add_row(organism, f'{count:,}', f'{percentage:.2f}%')

# Add total row
table.add_row('[bold]TOTAL[/bold]', f'[bold]{total:,}[/bold]', '[bold]100.00%[/bold]')

console.print(table)
"
                Organism Frequency Distribution
┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━┳━━━━━━━━━━━━┓
┃ Organism                           ┃     Count ┃ Percentage ┃
┡━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━╇━━━━━━━━━━━━┩
│ NULL                               │   726,723 │      8.04% │
│ Carassius gibelio                  │    49,889 │      0.55% │
│ Acipenser ruthenus                 │    45,669 │      0.51% │
│ Mercenaria mercenaria              │    44,179 │      0.49% │
│ Xyrauchen texanus                  │    43,525 │      0.48% │
│ Dreissena polymorpha               │    42,849 │      0.47% │
│ Mya arenaria                       │    40,852 │      0.45% │
│ Mytilus trossulus                  │    37,880 │      0.42% │
│ Haliotis rufescens                 │    36,563 │      0.40% │
│ Hemicordylus capensis              │    35,002 │      0.39% │
│ Mauremys reevesii                  │    34,819 │      0.39% │
│ Callithrix jacchus                 │    32,784 │      0.36% │
│ Mus musculus                       │    32,612 │      0.36% │
│ Symphalangus syndactylus           │    32,529 │      0.36% │
│ Homo sapiens                       │    32,210 │      0.36% │
│ Crassostrea virginica              │    32,194 │      0.36% │
│ Acropora millepora                 │    31,394 │      0.35% │
│ Brienomyrus brachyistius           │    31,359 │      0.35% │
│ Anguilla rostrata                  │    31,275 │      0.35% │
│ Astyanax mexicanus                 │    31,159 │      0.34% │
│ Astatotilapia calliptera           │    30,516 │      0.34% │
│ Conger conger                      │    30,354 │      0.34% │
│ Necator americanus                 │    30,339 │      0.34% │
│ Ctenopharyngodon idella            │    30,329 │      0.34% │
│ Esox lucius                        │    30,262 │      0.33% │
│ Fundulus heteroclitus              │    30,129 │      0.33% │
│ Hoplias malabaricus                │    29,955 │      0.33% │
│ Pygocentrus nattereri              │    29,937 │      0.33% │
│ Choloepus didactylus               │    29,596 │      0.33% │
│ Pimephales promelas                │    29,570 │      0.33% │
│ Rhineura floridana                 │    29,493 │      0.33% │
│ Monodelphis domestica              │    29,292 │      0.32% │
│ Neoarius graeffei                  │    29,242 │      0.32% │
│ Bubalus bubalis                    │    29,185 │      0.32% │
│ Engraulis encrasicolus             │    29,124 │      0.32% │
│ Macaca fascicularis                │    28,923 │      0.32% │
│ Zalophus californianus             │    28,890 │      0.32% │
│ Strongylocentrotus purpuratus      │    28,866 │      0.32% │
│ Biomphalaria glabrata              │    28,853 │      0.32% │
│ Clupea harengus                    │    28,766 │      0.32% │
│ Cavia porcellus                    │    28,541 │      0.32% │
│ Nycticebus coucang                 │    28,502 │      0.32% │
│ Salvelinus sp. IW2-2015            │    28,375 │      0.31% │
│ Cervus canadensis                  │    28,374 │      0.31% │
│ Sebastes umbrosus                  │    28,301 │      0.31% │
│ Scleropages formosus               │    28,259 │      0.31% │
│ Siniperca chuatsi                  │    27,868 │      0.31% │
│ Hippopotamus amphibius kiboko      │    27,815 │      0.31% │
│ Micropterus dolomieu               │    27,583 │      0.31% │
│ Lutra lutra                        │    27,565 │      0.30% │
│ Elephas maximus indicus            │    27,508 │      0.30% │
│ Gambusia affinis                   │    27,489 │      0.30% │
│ Dasypus novemcinctus               │    27,476 │      0.30% │
│ Panthera leo                       │    27,350 │      0.30% │
│ Girardinichthys multiradiatus      │    27,325 │      0.30% │
│ Pocillopora verrucosa              │    27,264 │      0.30% │
│ Lates calcarifer                   │    27,203 │      0.30% │
│ Clarias gariepinus                 │    27,112 │      0.30% │
│ Melanotaenia boesemani             │    27,007 │      0.30% │
│ Manis pentadactyla                 │    26,974 │      0.30% │
│ Ictalurus furcatus                 │    26,874 │      0.30% │
│ Gopherus evgoodei                  │    26,864 │      0.30% │
│ Pangasianodon hypophthalmus        │    26,836 │      0.30% │
│ Larimichthys crocea                │    26,514 │      0.29% │
│ Triplophysa dalaica                │    26,476 │      0.29% │
│ Lingula anatina                    │    26,347 │      0.29% │
│ Cololabis saira                    │    26,324 │      0.29% │
│ Stegostoma tigrinum                │    26,281 │      0.29% │
│ Salarias fasciatus                 │    26,255 │      0.29% │
│ Amphiprion ocellaris               │    26,227 │      0.29% │
│ Diceros bicornis minor             │    26,212 │      0.29% │
│ Betta splendens                    │    26,182 │      0.29% │
│ Rousettus aegyptiacus              │    26,126 │      0.29% │
│ Scatophagus argus                  │    25,989 │      0.29% │
│ Silurus meridionalis               │    25,981 │      0.29% │
│ Camelus ferus                      │    25,949 │      0.29% │
│ Anolis carolinensis                │    25,934 │      0.29% │
│ Anabas testudineus                 │    25,921 │      0.29% │
│ Scophthalmus maximus               │    25,865 │      0.29% │
│ Ursus arctos                       │    25,781 │      0.29% │
│ Xenopus tropicalis                 │    25,781 │      0.29% │
│ Dromiciops gliroides               │    25,770 │      0.29% │
│ Sarcophilus harrisii               │    25,700 │      0.28% │
│ Mugil cephalus                     │    25,699 │      0.28% │
│ Alligator mississippiensis         │    25,681 │      0.28% │
│ Erpetoichthys calabaricus          │    25,664 │      0.28% │
│ Solea senegalensis                 │    25,615 │      0.28% │
│ Teleopsis dalmanni                 │    25,590 │      0.28% │
│ Labrus bergylta                    │    25,557 │      0.28% │
│ Passer domesticus                  │    25,543 │      0.28% │
│ Erinaceus europaeus                │    25,520 │      0.28% │
│ Tachysurus vachellii               │    25,505 │      0.28% │
│ Geotrypetes seraphini              │    25,496 │      0.28% │
│ Branchiostoma lanceolatum          │    25,490 │      0.28% │
│ Tursiops truncatus                 │    25,423 │      0.28% │
│ Trichomycterus rosablanca          │    25,369 │      0.28% │
│ Vombatus ursinus                   │    25,360 │      0.28% │
│ Limulus polyphemus                 │    25,306 │      0.28% │
│ Jaculus jaculus                    │    25,247 │      0.28% │
│ Hippoglossus hippoglossus          │    25,227 │      0.28% │
│ Hydra vulgaris                     │    25,172 │      0.28% │
│ Seriola aureovittata               │    25,172 │      0.28% │
│ Electrophorus electricus           │    25,131 │      0.28% │
│ Lemur catta                        │    25,068 │      0.28% │
│ Phacochoerus africanus             │    25,064 │      0.28% │
│ Mastacembelus armatus              │    25,003 │      0.28% │
│ Molossus molossus                  │    24,967 │      0.28% │
│ Moschus berezovskii                │    24,895 │      0.28% │
│ Sceloporus undulatus               │    24,882 │      0.28% │
│ Homarus americanus                 │    24,882 │      0.28% │
│ Rhinolophus ferrumequinum          │    24,840 │      0.27% │
│ Balaenoptera musculus              │    24,804 │      0.27% │
│ Eleutherodactylus coqui            │    24,781 │      0.27% │
│ Xiphias gladius                    │    24,776 │      0.27% │
│ Physeter macrocephalus             │    24,761 │      0.27% │
│ Mobula hypostoma                   │    24,734 │      0.27% │
│ Oryzias latipes                    │    24,679 │      0.27% │
│ Eleginops maclovinus               │    24,610 │      0.27% │
│ Plectropomus leopardus             │    24,589 │      0.27% │
│ Perognathus longimembris pacificus │    24,419 │      0.27% │
│ Aquila chrysaetos chrysaetos       │    24,415 │      0.27% │
│ Eriocheir sinensis                 │    24,354 │      0.27% │
│ Ornithodoros turicata              │    24,265 │      0.27% │
│ Phocoena sinus                     │    24,252 │      0.27% │
│ Synchiropus splendidus             │    24,239 │      0.27% │
│ Saccopteryx leptura                │    24,184 │      0.27% │
│ Ochotona princeps                  │    24,181 │      0.27% │
│ Lacerta agilis                     │    24,168 │      0.27% │
│ Dysidea avara                      │    24,099 │      0.27% │
│ Dermochelys coriacea               │    24,096 │      0.27% │
│ Toxotes jaculatrix                 │    24,093 │      0.27% │
│ Pecten maximus                     │    23,997 │      0.27% │
│ Cynocephalus volans                │    23,985 │      0.27% │
│ Takifugu flavidus                  │    23,839 │      0.26% │
│ Pomacea canaliculata               │    23,816 │      0.26% │
│ Hyaena hyaena                      │    23,776 │      0.26% │
│ Scomber scombrus                   │    23,756 │      0.26% │
│ Gymnodraco acuticeps               │    23,750 │      0.26% │
│ Monodon monoceros                  │    23,727 │      0.26% │
│ Kryptolebias marmoratus            │    23,661 │      0.26% │
│ Chanos chanos                      │    23,628 │      0.26% │
│ Pseudoliparis swirei               │    23,608 │      0.26% │
│ Sorex araneus                      │    23,574 │      0.26% │
│ Gadus macrocephalus                │    23,383 │      0.26% │
│ Notothenia coriiceps               │    23,353 │      0.26% │
│ Phyllostomus discolor              │    23,293 │      0.26% │
│ Sphaeramia orbicularis             │    23,287 │      0.26% │
│ Etheostoma cragini                 │    23,284 │      0.26% │
│ Grus americana                     │    23,276 │      0.26% │
│ Anoplopoma fimbria                 │    23,262 │      0.26% │
│ Cyclopterus lumpus                 │    23,230 │      0.26% │
│ Eublepharis macularius             │    23,145 │      0.26% │
│ Trachemys scripta elegans          │    23,087 │      0.26% │
│ Cyprinodon variegatus              │    23,080 │      0.26% │
│ Polyodon spathula                  │    23,058 │      0.26% │
│ Echeneis naucrates                 │    23,056 │      0.26% │
│ Eptesicus fuscus                   │    23,039 │      0.25% │
│ Ornithorhynchus anatinus           │    22,957 │      0.25% │
│ Hypomesus transpacificus           │    22,881 │      0.25% │
│ Hemiscyllium ocellatum             │    22,875 │      0.25% │
│ Rhipicephalus sanguineus           │    22,873 │      0.25% │
│ Heteronotia binoei                 │    22,734 │      0.25% │
│ Myripristis murdjan                │    22,685 │      0.25% │
│ Amia ocellicauda                   │    22,670 │      0.25% │
│ Dromaius novaehollandiae           │    22,641 │      0.25% │
│ Homalodisca vitripennis            │    22,607 │      0.25% │
│ Periophthalmus magnuspinnatus      │    22,606 │      0.25% │
│ Anarrhichthys ocellatus            │    22,552 │      0.25% │
│ Cuculus canorus                    │    22,537 │      0.25% │
│ Mesoplodon densirostris            │    22,508 │      0.25% │
│ Folsomia candida                   │    22,365 │      0.25% │
│ Gouania willdenowi                 │    22,358 │      0.25% │
│ Elgaria multicarinata webbii       │    22,344 │      0.25% │
│ Monopterus albus                   │    22,333 │      0.25% │
│ Denticeps clupeoides               │    22,307 │      0.25% │
│ Penaeus chinensis                  │    22,306 │      0.25% │
│ Octodon degus                      │    22,290 │      0.25% │
│ Rhincodon typus                    │    22,273 │      0.25% │
│ Tachyglossus aculeatus             │    22,250 │      0.25% │
│ Hydractinia symbiolongicarpus      │    22,227 │      0.25% │
│ Stegodyphus dumicola               │    22,207 │      0.25% │
│ Helobdella robusta                 │    22,171 │      0.25% │
│ Latimeria chalumnae                │    22,160 │      0.25% │
│ Leucoraja erinaceus                │    22,110 │      0.24% │
│ Chinchilla lanigera                │    22,054 │      0.24% │
│ Lottia gigantea                    │    22,036 │      0.24% │
│ Lethenteron reissneri              │    22,018 │      0.24% │
│ Parambassis ranga                  │    22,016 │      0.24% │
│ Varanus komodoensis                │    21,953 │      0.24% │
│ Thalassophryne amazonica           │    21,904 │      0.24% │
│ Rissa tridactyla                   │    21,857 │      0.24% │
│ Lampris incognitus                 │    21,835 │      0.24% │
│ Hipposideros armiger               │    21,766 │      0.24% │
│ Pteronotus mesoamericanus          │    21,630 │      0.24% │
│ Strigops habroptila                │    21,524 │      0.24% │
│ Syngnathus acus                    │    21,424 │      0.24% │
│ Pristis pectinata                  │    21,387 │      0.24% │
│ Lytechinus pictus                  │    21,375 │      0.24% │
│ Centruroides sculpturatus          │    21,296 │      0.24% │
│ Trichechus manatus latirostris     │    21,284 │      0.24% │
│ Argiope bruennichi                 │    21,197 │      0.23% │
│ Tyto alba                          │    21,179 │      0.23% │
│ Portunus trituberculatus           │    21,071 │      0.23% │
│ Neomonachus schauinslandi          │    21,058 │      0.23% │
│ Fukomys damarensis                 │    21,035 │      0.23% │
│ Tiliqua scincoides                 │    20,851 │      0.23% │
│ Phalacrocorax carbo                │    20,797 │      0.23% │
│ Pollicipes pollicipes              │    20,602 │      0.23% │
│ Paramacrobiotus metropolitanus     │    20,589 │      0.23% │
│ Falco rusticolus                   │    20,490 │      0.23% │
│ Zonotrichia leucophrys gambelii    │    20,488 │      0.23% │
│ Motacilla alba alba                │    20,462 │      0.23% │
│ Nilaparvata lugens                 │    20,414 │      0.23% │
│ Candoia aspera                     │    20,407 │      0.23% │
│ Cottoperca gobio                   │    20,363 │      0.23% │
│ Catharus ustulatus                 │    20,263 │      0.22% │
│ Spea bombifrons                    │    20,254 │      0.22% │
│ Nematostella vectensis             │    20,189 │      0.22% │
│ Coturnix japonica                  │    20,135 │      0.22% │
│ Callorhinchus milii                │    20,087 │      0.22% │
│ Sycon ciliatum                     │    20,066 │      0.22% │
│ Rhea pennata                       │    19,973 │      0.22% │
│ Morone saxatilis                   │    19,913 │      0.22% │
│ Myiozetetes cayanensis             │    19,911 │      0.22% │
│ Odobenus rosmarus divergens        │    19,882 │      0.22% │
│ Hirundo rustica                    │    19,847 │      0.22% │
│ Propithecus coquereli              │    19,830 │      0.22% │
│ Lineus longissimus                 │    19,691 │      0.22% │
│ Photinus pyralis                   │    19,524 │      0.22% │
│ Eurytemora carolleeae              │    19,366 │      0.21% │
│ Euleptes europaea                  │    19,338 │      0.21% │
│ Pogoniulus pusillus                │    19,337 │      0.21% │
│ Numida meleagris                   │    19,233 │      0.21% │
│ Prinia subflava                    │    19,176 │      0.21% │
│ Caloenas nicobarica                │    19,163 │      0.21% │
│ Cygnus atratus                     │    19,104 │      0.21% │
│ Orbicella faveolata                │    19,088 │      0.21% │
│ Echinops telfairi                  │    18,993 │      0.21% │
│ Oenanthe melanoleuca               │    18,966 │      0.21% │
│ Protobothrops mucrosquamatus       │    18,843 │      0.21% │
│ Apus apus                          │    18,836 │      0.21% │
│ Elephantulus edwardii              │    18,831 │      0.21% │
│ Artemia franciscana                │    18,707 │      0.21% │
│ Patella vulgata                    │    18,681 │      0.21% │
│ Serinus canaria                    │    18,548 │      0.21% │
│ Colius striatus                    │    18,500 │      0.20% │
│ Corticium candelabrum              │    18,478 │      0.20% │
│ Melopsittacus undulatus            │    18,474 │      0.20% │
│ Corvus cornix cornix               │    18,449 │      0.20% │
│ Xenia sp. Carnegie-2017            │    18,436 │      0.20% │
│ Nanorana parkeri                   │    18,430 │      0.20% │
│ Carlito syrichta                   │    18,320 │      0.20% │
│ Acanthaster planci                 │    18,238 │      0.20% │
│ Cynoglossus semilaevis             │    18,109 │      0.20% │
│ Thamnophis elegans                 │    17,986 │      0.20% │
│ Pseudochaenichthys georgianus      │    17,943 │      0.20% │
│ Liolophura sinensis                │    17,857 │      0.20% │
│ Microtus ochrogaster               │    17,806 │      0.20% │
│ Planococcus citri                  │    17,794 │      0.20% │
│ Pseudonaja textilis                │    17,771 │      0.20% │
│ Saccoglossus kowalevskii           │    17,666 │      0.20% │
│ Hyalella azteca                    │    17,592 │      0.19% │
│ Ctenocephalides felis              │    17,579 │      0.19% │
│ Python bivittatus                  │    17,573 │      0.19% │
│ Cinclus cinclus                    │    17,569 │      0.19% │
│ Sylvia atricapilla                 │    17,565 │      0.19% │
│ Stomoxys calcitrans                │    17,497 │      0.19% │
│ Otolemur garnettii                 │    17,478 │      0.19% │
│ Cyrtonyx montezumae                │    17,475 │      0.19% │
│ Anneissia japonica                 │    17,459 │      0.19% │
│ Gavia stellata                     │    17,120 │      0.19% │
│ Ischnura elegans                   │    17,052 │      0.19% │
│ Parus major                        │    16,970 │      0.19% │
│ Aplysia californica                │    16,928 │      0.19% │
│ Lipotes vexillifer                 │    16,900 │      0.19% │
│ Bacillus rossius redtenbacheri     │    16,788 │      0.19% │
│ Gymnogyps californianus            │    16,740 │      0.19% │
│ Manduca sexta                      │    16,725 │      0.19% │
│ Dryobates pubescens                │    16,725 │      0.19% │
│ Calypte anna                       │    16,718 │      0.18% │
│ Octopus bimaculoides               │    16,650 │      0.18% │
│ Asterias rubens                    │    16,417 │      0.18% │
│ Bombyx mori                        │    16,146 │      0.18% │
│ Episyrphus balteatus               │    15,833 │      0.18% │
│ Tigriopus californicus             │    15,815 │      0.17% │
│ Suricata suricatta                 │    15,740 │      0.17% │
│ Uloborus diversus                  │    15,706 │      0.17% │
│ Caenorhabditis elegans             │    15,676 │      0.17% │
│ Belonocnema kinseyi                │    15,623 │      0.17% │
│ Coccinella septempunctata          │    15,619 │      0.17% │
│ Tupaia chinensis                   │    15,614 │      0.17% │
│ Zeugodacus cucurbitae              │    15,545 │      0.17% │
│ Bolinopsis microptera              │    15,484 │      0.17% │
│ Daktulosphaira vitifoliae          │    15,457 │      0.17% │
│ Hermetia illucens                  │    15,424 │      0.17% │
│ Cryptotermes secundus              │    15,412 │      0.17% │
│ Rhopilema esculentum               │    15,366 │      0.17% │
│ Helicoverpa armigera               │    15,323 │      0.17% │
│ Pectinophora gossypiella           │    15,236 │      0.17% │
│ Contarinia nasturtii               │    15,225 │      0.17% │
│ Symsagittifera roscoffensis        │    15,136 │      0.17% │
│ Bradysia coprophila                │    15,077 │      0.17% │
│ Anoplophora glabripennis           │    15,060 │      0.17% │
│ Opisthorchis viverrini             │    14,996 │      0.17% │
│ Halichondria panicea               │    14,986 │      0.17% │
│ Crocodylus porosus                 │    14,964 │      0.17% │
│ Thrips palmi                       │    14,962 │      0.17% │
│ Zootermopsis nevadensis            │    14,867 │      0.16% │
│ Adelges cooleyi                    │    14,810 │      0.16% │
│ Chiroxiphia lanceolata             │    14,754 │      0.16% │
│ Camarhynchus parvulus              │    14,734 │      0.16% │
│ Indicator indicator                │    14,653 │      0.16% │
│ Lucilia cuprina                    │    14,633 │      0.16% │
│ Condylura cristata                 │    14,589 │      0.16% │
│ Leptopilina boulardi               │    14,514 │      0.16% │
│ Amyelois transitella               │    14,505 │      0.16% │
│ Cydia amplana                      │    14,472 │      0.16% │
│ Plutella xylostella                │    14,427 │      0.16% │
│ Aricia agestis                     │    14,334 │      0.16% │
│ Ostrinia nubilalis                 │    14,296 │      0.16% │
│ Cimex lectularius                  │    14,201 │      0.16% │
│ Neodiprion fabricii                │    14,025 │      0.16% │
│ Sturnus vulgaris                   │    13,861 │      0.15% │
│ Actinia tenebrosa                  │    13,802 │      0.15% │
│ Varroa jacobsoni                   │    13,733 │      0.15% │
│ Cephus cinctus                     │    13,724 │      0.15% │
│ Aethina tumida                     │    13,722 │      0.15% │
│ Chrysoperla carnea                 │    13,656 │      0.15% │
│ Glossina fuscipes                  │    13,644 │      0.15% │
│ Amphimedon queenslandica           │    13,609 │      0.15% │
│ Venturia canescens                 │    13,484 │      0.15% │
│ Cloeon dipterum                    │    13,432 │      0.15% │
│ Priapulus caudatus                 │    13,396 │      0.15% │
│ Papilio machaon                    │    13,365 │      0.15% │
│ Hyposmocoma kahamanoa              │    13,320 │      0.15% │
│ Ciona intestinalis                 │    13,298 │      0.15% │
│ Danaus plexippus                   │    13,288 │      0.15% │
│ Oppia nitens                       │    13,236 │      0.15% │
│ Trichinella spiralis               │    13,132 │      0.15% │
│ Diorhabda carinulata               │    12,947 │      0.14% │
│ Daphnia carinata                   │    12,914 │      0.14% │
│ Aphidius gifuensis                 │    12,899 │      0.14% │
│ Pieris rapae                       │    12,874 │      0.14% │
│ Gavialis gangeticus                │    12,844 │      0.14% │
│ Athalia rosae                      │    12,841 │      0.14% │
│ Tribolium castaneum                │    12,833 │      0.14% │
│ Cylas formicarius                  │    12,803 │      0.14% │
│ Osmia bicornis bicornis            │    12,742 │      0.14% │
│ Agrilus planipennis                │    12,646 │      0.14% │
│ Oscarella lobularis                │    12,625 │      0.14% │
│ Nicrophorus vespilloides           │    12,607 │      0.14% │
│ Hylaeus volcanicus                 │    12,603 │      0.14% │
│ Dalotia coriaria                   │    12,407 │      0.14% │
│ Miniopterus natalensis             │    12,326 │      0.14% │
│ Apis cerana                        │    12,270 │      0.14% │
│ Nipponia nippon                    │    12,232 │      0.14% │
│ Nasonia vitripennis                │    12,033 │      0.13% │
│ Calidris pugnax                    │    12,031 │      0.13% │
│ Antrostomus carolinensis           │    12,030 │      0.13% │
│ Egretta garzetta                   │    11,920 │      0.13% │
│ Fulmarus glacialis                 │    11,912 │      0.13% │
│ Cataglyphis hispanica              │    11,908 │      0.13% │
│ Brugia malayi                      │    11,827 │      0.13% │
│ Mesitornis unicolor                │    11,822 │      0.13% │
│ Euwallacea similis                 │    11,781 │      0.13% │
│ Strongyloides ratti                │    11,735 │      0.13% │
│ Vespula pensylvanica               │    11,660 │      0.13% │
│ Trichogramma pretiosum             │    11,647 │      0.13% │
│ Cariama cristata                   │    11,584 │      0.13% │
│ Charadrius vociferus               │    11,576 │      0.13% │
│ Pterocles gutturalis               │    11,541 │      0.13% │
│ Leptosomus discolor                │    11,537 │      0.13% │
│ Eurypyga helias                    │    11,498 │      0.13% │
│ Acanthisitta chloris               │    11,432 │      0.13% │
│ Chlamydotis macqueenii             │    11,430 │      0.13% │
│ Phaethon lepturus                  │    11,418 │      0.13% │
│ Chelmon rostratus                  │    11,382 │      0.13% │
│ Tauraco erythrolophus              │    11,300 │      0.13% │
│ Apaloderma vittatum                │    11,219 │      0.12% │
│ Lutzomyia longipalpis              │    11,209 │      0.12% │
│ Rhopalosiphum maidis               │    11,154 │      0.12% │
│ Copidosoma floridanum              │    11,041 │      0.12% │
│ Pygoscelis adeliae                 │    10,964 │      0.12% │
│ Trichoplax adhaerens               │    10,959 │      0.12% │
│ Merops nubicus                     │    10,948 │      0.12% │
│ Galendromus occidentalis           │    10,930 │      0.12% │
│ Schistosoma mansoni                │    10,681 │      0.12% │
│ Anopheles bellator                 │    10,625 │      0.12% │
│ Culicoides brevitarsis             │    10,591 │      0.12% │
│ Buceros rhinoceros silvestris      │    10,582 │      0.12% │
│ Echinococcus granulosus            │    10,362 │      0.11% │
│ Tetranychus urticae                │    10,345 │      0.11% │
│ Athene cunicularia                 │    10,017 │      0.11% │
│ Ceratosolen solmsi marchali        │     9,842 │      0.11% │
│ Pediculus humanus corporis         │     9,665 │      0.11% │
│ Dufourea novaeangliae              │     9,383 │      0.10% │
│ Drosophila melanogaster            │     9,213 │      0.10% │
│ Apteryx rowi                       │     9,017 │      0.10% │
│ Gordionus sp. m RMFG-2023          │     8,910 │      0.10% │
│ Orussus abietinus                  │     8,627 │      0.10% │
│ Nothoprocta perdicaria             │     7,659 │      0.08% │
│ Exaiptasia diaphana                │     7,494 │      0.08% │
│ Malurus melanocephalus             │     5,329 │      0.06% │
│ Acanthopagrus latus                │     4,562 │      0.05% │
│ Gigantopelta aegis                 │     1,463 │      0.02% │
│ Molothrus ater                     │       858 │      0.01% │
│ Trichosurus vulpecula              │       255 │      0.00% │
│ Vulpes lagopus                     │        79 │      0.00% │
│ Megalops cyprinoides               │        42 │      0.00% │
│ Struthio camelus                   │        11 │      0.00% │
│ Taeniopygia guttata                │        11 │      0.00% │
│ Danio rerio                        │        10 │      0.00% │
│ Misgurnus anguillicaudatus         │        10 │      0.00% │
│ Odobenus rosmarus rosmarus         │        10 │      0.00% │
│ Hippopotamus amphibius             │        10 │      0.00% │
│ Salvelinus alpinus                 │        10 │      0.00% │
│ Ictidomys tridecemlineatus         │        10 │      0.00% │
│ Styela clava                       │        10 │      0.00% │
│ Paralichthys olivaceus             │        10 │      0.00% │
│ Ciona intestinalis B CG-2006       │        10 │      0.00% │
│ Oryctolagus cuniculus              │        10 │      0.00% │
│ Microcebus murinus                 │        10 │      0.00% │
│ Motacilla alba                     │        10 │      0.00% │
│ Diceros bicornis                   │        10 │      0.00% │
│ Trichechus manatus                 │        10 │      0.00% │
│ Gasterosteus aculeatus             │        10 │      0.00% │
│ Nothobranchius furzeri             │        10 │      0.00% │
│ Lepisosteus oculatus               │        10 │      0.00% │
│ Trachemys scripta                  │        10 │      0.00% │
│ Procambarus clarkii                │         9 │      0.00% │
│ Liolophura japonica                │         9 │      0.00% │
│ Halyomorpha halys                  │         9 │      0.00% │
│ Bemisia tabaci                     │         9 │      0.00% │
│ Dermatophagoides pteronyssinus     │         8 │      0.00% │
│ TOTAL                              │ 9,038,354 │    100.00% │
└────────────────────────────────────┴───────────┴────────────┘