Update SIMORD.py

SIMORD.py

@@ -128,38 +128,42 @@ def _normalize_primock_id(stem: str) -> str:
     s = s.replace("consultation", "")
     return s
 
-def _build_primock_transcript_dict(root: str) -> Dict[str, dict]:
-    """
-    Mirror of read_primock_data post-conversion:
-      reads *.txt in primock57-main/transcripts and applies the same tag normalization.
-    """
-    tdict: Dict[str, dict] = {}
-    base = None
-    for name in os.listdir(root):
-        if name.startswith("primock57"):
-            base = os.path.join(root, name)
-            break
-    if not base:
-        return tdict
-
-    tx_dir = os.path.join(base, "transcripts")
-    if not os.path.isdir(tx_dir):
-        # If transcripts haven't been generated yet by upstream script, we skip.
-        return tdict
+def _build_primock_transcript_dict(primock_path):
+    # run primock txtgrid_to_transcript.py
+    script_path = os.path.join(primock_path, "primock57-main", "scripts", "textgrid_to_transcript.py")
+    if not os.path.exists(script_path):
+        print(f"Script {script_path} does not exist. Skipping Primock data.")
+        return
+    transcript_path = os.path.join(primock_path, "primock57-main", "transcripts")
+    primock_transcript_path = os.path.join(TMP_DIR, "primock_transcript")
+    os.system(f"python {script_path} --transcript_path {transcript_path} --output_path {primock_transcript_path}")
+    print(f"Primock data saved to {primock_transcript_path}")
 
-    for fn in os.listdir(tx_dir):
-        if not fn.lower().endswith(".txt"):
-            continue
-        fp = os.path.join(tx_dir, fn)
-        lines = [ln.strip() for ln in _read_text(fp).splitlines() if ln.strip()]
-        norm = []
-        for line in lines:
-            line = line.replace("Doctor:", "[doctor]").replace("Patient:", "[patient]")
-            norm.append(line)
-        stem = os.path.splitext(fn)[0]
-        primock_id = _normalize_primock_id(stem)
-        tdict[primock_id] = {"transcript": "\n".join(norm)}
-    return tdict
+    # walk through the directory and find all json files
+    transcript_data = {}
+    for dirpath, _, files in os.walk(primock_transcript_path):
+        for filename in files:
+            if filename.endswith(".txt"):
+                file_path = os.path.join(dirpath, filename)
+                with open(file_path, 'r') as f:
+                    primock_id = filename.replace(".txt", "")
+                    primock_id = primock_id.replace("day", "primock57_")
+                    primock_id = primock_id.replace("consultation0", "")
+                    primock_id = primock_id.replace("consultation", "")
+                    
+                    data = f.readlines()
+                    data = [line.strip() for line in data if line.strip()]
+                    transcript_lines = []
+                    for line in data:
+                        line = line.replace("Doctor:", "[doctor]")
+                        line = line.replace("Patient:", "[patient]")
+                        transcript_lines.append(line)
+                    transcript_data[primock_id] = {
+                        "transcript": "\n".join(transcript_lines)
+                    }
+    
+    print(f"Found {len(transcript_data)} transcripts in Primock data")
+    return transcript_data
 
 def _load_annotations(path: str) -> List[dict]:
     # Expect a JSON array (list of dicts). If JSONL, we also handle it gracefully.