Update scripts/moo.sh
Browse files- scripts/moo.sh +2 -16
scripts/moo.sh
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export CUDA_VISIBLE_DEVICES=7
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python -u moo.py \
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--output_file '/scratch/pranamlab/tong/MOG-DFM/collaboration/
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--length 10 \
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--n_batches 600 \
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--weights 1 1 1 4 4 2 \
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--motifs '16-31,62-79' \
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--motif_penalty \
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--target_protein MHVPSGAQLGLRPDLLARRRLKRCPSRWLCLSAAWSFVQVFSEPDGFTVIFSGLGNNAGGTMHWNDTRPAHFRILKVVLREAVAECLMDSYSLDVHGGRRTAAG
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# python -u moo.py \
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# --output_file '/scratch/pranamlab/tong/MOG-DFM/collaboration/new_GFAP_365-374.csv' \
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# --length 10 \
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# --weights 1 1 1 1 1 8 8 \
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# --motifs '365-374' \
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# --target_protein MERRRITSAARRSYVSSGEMMVGGLAPGRRLGPGTRLSLARMPPPLPTRVDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKDVM
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# python -u moo.py \
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# --output_file '/scratch/pranamlab/tong/MOG-DFM/collaboration/new_GFAP_76-79_365-374.csv' \
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# --length 10 \
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# --weights 1 1 1 1 1 8 8 \
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# --motifs '76-79, 365-374' \
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# --target_protein MERRRITSAARRSYVSSGEMMVGGLAPGRRLGPGTRLSLARMPPPLPTRVDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKDVM
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export CUDA_VISIBLE_DEVICES=7
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python -u moo.py \
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--output_file '/scratch/pranamlab/tong/MOG-DFM/collaboration/FFX_test.csv' \
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--length 10 \
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--n_batches 600 \
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--weights 1 1 1 4 4 2 \
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--motifs '16-31,62-79' \
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--motif_penalty \
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--objectives Hemolysis Non-Fouling Half-Life Affinity Motif Specificity \
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--target_protein MHVPSGAQLGLRPDLLARRRLKRCPSRWLCLSAAWSFVQVFSEPDGFTVIFSGLGNNAGGTMHWNDTRPAHFRILKVVLREAVAECLMDSYSLDVHGGRRTAAG
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